A coefficient comparison of weighted similarity extreme learning machine for drug screening

Abstract

Machine learning techniques are becoming popular in drug discovery process. It can be used to predict the biological activities of compounds. This paper focuses on virtual screening task. We proposed the Weighted Similarity Extreme Learning Machine algorithm (WELM). It is based on Single Layer Feedforward Neural Network. The algorithm is powerful, iteratively free, and easy to program. In this work, we compared the performance of 17 different types of coefficients with WELM on a well-known dataset in the area of virtual screening named Maximum Unbiased Validation dataset. Moreover, the WELM with different types of coefficients were also compared with the conventional technique-similarity searching. WELM together with Jaccard/Tanimoto were able to achieve the best results on average in most of the activity classes.